PoplarV1, Main, Exploration, bibRecord, 000930

Genome-wide identification, expression and functional analysis of Populus xylogen-like genes.

Identifieur interne : 000930 ( Main/Exploration ); précédent : 000929; suivant : 000931

Genome-wide identification, expression and functional analysis of Populus xylogen-like genes.

Auteurs : Caili Wang [République populaire de Chine] ; Lincai Chen [République populaire de Chine] ; Heyu Yang [République populaire de Chine] ; Shaohui Yang [République populaire de Chine] ; Jiehua Wang [République populaire de Chine]

Source :

Plant science : an international journal of experimental plant biology [ 1873-2259 ] ; 2019.

RBID : pubmed:31481222

Descripteurs français

English descriptors

KwdEn :
- Animals (MeSH), Arabidopsis (cytology), Arabidopsis (genetics), Cotyledon (cytology), Cotyledon (genetics), Gene Expression Regulation, Plant (genetics), Genes, Reporter (MeSH), Genome, Plant (genetics), Mucoproteins (genetics), Phenotype (MeSH), Phylogeny (MeSH), Plant Growth Regulators (metabolism), Plant Leaves (cytology), Plant Leaves (genetics), Plant Proteins (genetics), Plant Roots (cytology), Plant Roots (genetics), Plants, Genetically Modified (MeSH), Populus (cytology), Populus (genetics).
MESH :
- chemical , genetics : Mucoproteins, Plant Proteins.
- cytology : Arabidopsis, Cotyledon, Plant Leaves, Plant Roots, Populus.
- genetics : Arabidopsis, Cotyledon, Gene Expression Regulation, Plant, Genome, Plant, Plant Leaves, Plant Roots, Populus.
- chemical , metabolism : Plant Growth Regulators.
- Animals, Genes, Reporter, Phenotype, Phylogeny, Plants, Genetically Modified.

Abstract

As an extracellular arabinogalactan protein (AGP) containing a non-specific lipid transfer protein (nsLTP) domain, xylogen mediates the local intercellular communication required for tracheary element (TE) differentiation in Zinnia cell culture. Although XYLP (xylogen-like protein) gene families have been reported in Arabidopsis and rice, no comprehensive analysis has been performed in woody plants. In this work, 31 XYLP genes in five phylogenetic groups were identified from Populus trichocarpa genome and a comprehensive bioinformatic analysis including gene and protein structures, chromosomal locations and duplication events were conducted. In-silico data and qRT-PCR results indicated that PtXYLP1 is predominantly expressed in poplar apex, young leaves and roots, while PtXYLP2 is uniformly expressed across a variety of tissues with a low abundance. Analysis on PtXYLP1pro:GUS and PtXYLP2pro:GUS in Arabidopsis revealed their differential expression patterns during seed germination and specific inductions by exogenously applied phytohormones including auxin, cytokinin and GA. When overexpressed in Arabidopsis, PtXYLP1 but not PtXYLP2 resulted in cotyledons with defective venation patterns and interrupted secondary (2°) vein loops, which phenotype was underpinned by the down-regulation of genes indispensably required by embryonic venation development at procambium and/or vessel level.

DOI: 10.1016/j.plantsci.2019.110191
PubMed: 31481222

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000728
to stream Main, to step Curation: 000728

Le document en format XML

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<front><div type="abstract" xml:lang="en">As an extracellular arabinogalactan protein (AGP) containing a non-specific lipid transfer protein (nsLTP) domain, xylogen mediates the local intercellular communication required for tracheary element (TE) differentiation in Zinnia cell culture. Although XYLP (xylogen-like protein) gene families have been reported in Arabidopsis and rice, no comprehensive analysis has been performed in woody plants. In this work, 31 XYLP genes in five phylogenetic groups were identified from Populus trichocarpa genome and a comprehensive bioinformatic analysis including gene and protein structures, chromosomal locations and duplication events were conducted. In-silico data and qRT-PCR results indicated that PtXYLP1 is predominantly expressed in poplar apex, young leaves and roots, while PtXYLP2 is uniformly expressed across a variety of tissues with a low abundance. Analysis on PtXYLP1pro:GUS and PtXYLP2pro:GUS in Arabidopsis revealed their differential expression patterns during seed germination and specific inductions by exogenously applied phytohormones including auxin, cytokinin and GA. When overexpressed in Arabidopsis, PtXYLP1 but not PtXYLP2 resulted in cotyledons with defective venation patterns and interrupted secondary (2°) vein loops, which phenotype was underpinned by the down-regulation of genes indispensably required by embryonic venation development at procambium and/or vessel level.</div>
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<Abstract><AbstractText>As an extracellular arabinogalactan protein (AGP) containing a non-specific lipid transfer protein (nsLTP) domain, xylogen mediates the local intercellular communication required for tracheary element (TE) differentiation in Zinnia cell culture. Although XYLP (xylogen-like protein) gene families have been reported in Arabidopsis and rice, no comprehensive analysis has been performed in woody plants. In this work, 31 XYLP genes in five phylogenetic groups were identified from Populus trichocarpa genome and a comprehensive bioinformatic analysis including gene and protein structures, chromosomal locations and duplication events were conducted. In-silico data and qRT-PCR results indicated that PtXYLP1 is predominantly expressed in poplar apex, young leaves and roots, while PtXYLP2 is uniformly expressed across a variety of tissues with a low abundance. Analysis on PtXYLP1pro:GUS and PtXYLP2pro:GUS in Arabidopsis revealed their differential expression patterns during seed germination and specific inductions by exogenously applied phytohormones including auxin, cytokinin and GA. When overexpressed in Arabidopsis, PtXYLP1 but not PtXYLP2 resulted in cotyledons with defective venation patterns and interrupted secondary (2°) vein loops, which phenotype was underpinned by the down-regulation of genes indispensably required by embryonic venation development at procambium and/or vessel level.</AbstractText>
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{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:31481222
   |texte=   Genome-wide identification, expression and functional analysis of Populus xylogen-like genes.
}}

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Genome-wide identification, expression and functional analysis of Populus xylogen-like genes.

Genome-wide identification, expression and functional analysis of Populus xylogen-like genes.

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